Saturday 11 June 2016

ligation - What does 5' and 3' mean in DNA and RNA strands?



What are 5' and 3' in DNA and RNA strands? Please clarify with some images and please use simple English.



Answer



The 5' and 3' mean "five prime" and "three prime", which indicate the carbon numbers in the DNA's sugar backbone. The 5' carbon has a phosphate group attached to it and the 3' carbon a hydroxyl (-OH) group. This asymmetry gives a DNA strand a "direction". For example, DNA polymerase works in a 5' -> 3' direction, that is, it adds nucleotides to the 3' end of the molecule (the -OH group is not shown in diagram), thus advancing to that direction (downwards).


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