Friday, 11 November 2016

evolution - Assumptions of Hardy-Weinberg rule


The post Solving Hardy Weinberg problems offers an easy explanation of Hardy-Weinberg rule. The current top answer explicitly does not talk about the assumptions of Hardy-Weinberg. A model makes sense only if one is able to tell its domain of definition and therefore it is critical to understand the assumptions underlying Hardy-Weinberg assumptions.



What are the assumptions of Hardy-Weinberg rule?



Answer



Here are the assumptions to the standard Hardy-Weinberg rule (HWr) formulation


$$p^2 + 2p(1-p) + (1-p)^2 = 1$$


See Solving Hardy Weinberg problems for more info about this formulation.



The locus of interest is bi-allelic


This is an obvious assumptions, however it is very easy to extrapole HWr to any number of loci.


Organisms are diploid


This is another obvious assumption that is very easy overcome. This also means that HWr does not hold for loci present on sexual chromosomes as those chromosomes do not display a simple diploid behaviour.



Only sexual reproduction occurs


If some individuals are able to undergo non-sexual reproduction, then the rule does not hold anymore. See also Panmixia as these two assumptions are related.


Panmixia


Panmixia is often called "random mating". Panmixia is the state where each individual is equally to mate with any other individual in the population (including itself). There is therefore no population structure and no mate choice.


Let $N$ be the number of individuals in the population, in absence of selection (see If selection, it must be on fecundity alone), the probability to mate with any given individual (including itself) is $\frac{1}{N}$. You will note that it requires that individuals are able to self (but not clone as reproduction must still be sexual).


If selection, it must be on fecundity alone


If selection occurs, then it must on fecundity (right before reproduction). If selection occurs on survival during the lifetime, then the selected genotypes will be in excess in comparison to Hardy-Weinberg expectations.


If migration, it must be right before reproduction only


For the same reason as above, if there is migration, then it must be right before fecundity. If migration occur during the lifetime, then it will have a very similar effect than selection. Selection would increase the frequency of selected genotypes above HR expectations. Migration would increase the frequency of incoming genotypes above HR expectations.


Non-overlapping generations



This means that everyone reproduce in the exact same time and die right afterward. Very few species would qualify for such assumptions.


Population of infinite size


If previous assumptions already seemed hard to meet in the real world, the assumption of infinite population is absolutely impossible to meet.


Deviation from this assumption will cause deviations from expectations. Such deviations are often tested via a Chi squared goodness-of-fit test.


Note by the way that if the population is of infini size, there is no mutation, no migration and no selection, then there is no evolution.


Other assumptions


Biology is a science of complex systems. There are always other assumption one might want to consider. For example I did not talk about sex-specific selection or sex-specific mutation rate. But I am hoping that with the above I went over the most important assumptions.



All models are wrong but some are useful. There exist no real life example of a population that perfectly fit into HWr assumptions but it does not mean the model isn't useful. Actually most population approximate HW expectations quite well. You will note also that it is by understanding how a scenario lead to a specific observation that we can interpret how derivation from the expectations can be achieved.


So yes, HWr is one of the most basic and most important rule in population genetics. It is so basic, that I would hardly name it in any fancy way as it is just the simple application of basic probability theory. See Solving Hardy Weinberg problems for more info.



No comments:

Post a Comment

evolution - Are there any multicellular forms of life which exist without consuming other forms of life in some manner?

The title is the question. If additional specificity is needed I will add clarification here. Are there any multicellular forms of life whic...