During the past years of my PhD program in biology, my advisor has developed a habit of lending my service to other labs/groups for potential collaborating opportunities. In addition to helping fellow students in the lab with their projects, I've helped a handful of other labs/groups with various data analysis and statistical testing tasks that were totally unrelated to my PhD project; I rarely got anything in return other than practicing my relevant skills.
There is a lab in our department that I helped with data analysis in June. I've submitted my PhD thesis in August. This lab now came back to my advisor asking for a further work involving testing the correlation between the expressions of 200ish genes and different phenotype in 20ish RNA-seq datasets. My advisor has handed the job to me again.
It is not a small task to me, and since the submission of my PhD thesis my scholarship has stopped so I have to work to pay the bills. Also, I feel unappreciated because the other lab doesn't even know I am the person doing the job, and they will probably list my advisor as a co-author should there be a paper.
I'd like to know if I should turn down the request, even if it will potentially result in my advisor rejecting a recommendation letter? My advisor once jokingly mentioned that they are holding their recommendation letters hostage so I have to continue working for them (for free). I've done tons of unrelated and unpaid works for them and this project feels like the last straw.
Answer
Just to clarify, when you say "holding their recommendation letters hostage", do you mean that that other group would refuse to provide you a recommendation letter, or that your advisor would refuse to write you one, if you didn't do the required work?
My first advice would be to talk to your advisor, especially since your scholarship has run its course. No reasonable person would insist under the circumstances, but you should also consider that there might a misunderstanding, e.g. that your advisor feels that you benefit from such an arrangement, so an honest conversation might clear everything up. However, if the latter part of my question is the case, that goes beyond unethical and I wouldn't be surprised if your problems wouldn't matter to a person like this.
There are a few options you have. First, is to unconditionally refuse to do the assigned work and take the consequences, whatever they might be. Second, to conditionally refuse to work, i.e. you won't do it unless they compensate you for it (pay, authorship, etc.). Third, to suck it up, as you are about to graduate soon and hopefully leave that institution, it might be worth considering that this is the last time you have to do something like that.
Now, what worries me the most is the possibility that your graduation could be sidelined or delayed in order to force you to work more for them (you didn't comment whether or not that was a possibility). If that is the case, all the other options are rather useless and in comes the fourth option, that I deliberately avoided above as being the most destructive: escalate the whole thing to the higher-ups (the department level, the university level, maybe even an attorney) and hope that in some future your case will be resolved.
Based on the question, I can't gauge the scope of the corruption, i.e. is only the advisor corrupted, does the other group know that you are essentially forced to work for them, for free, does the department condone such behavior? That and the location your based at, should help you define the impact of the fourth option.
Bottom line, my advice is: get out of there as soon as you can. Make a cost-benefit analysis of your next actions. Ask yourself questions like: What would it take just to graduate? What would it take to graduate and ensure reasonable recommendations? Can I afford it (and here I don't mean just the financial part, but also the price in time, mental health, opportunities, etc.)?
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