Tuesday, 12 June 2018

evolution - Inbreeding depression and dominance


From this article, second paragraph of the second page



A classic theoretical result is that the mean of a character controlled by a single locus i with two alleles Ai1 and Ai2 is only affected by the value of f if there is some degree of dominance.



where f is the Wright's inbreeding coefficient.


The authors then add:




Assume that the trait is scaled such that the values for the genotypes Ai1Ai1, Ai1Ai2, and Ai2Ai2 are -ai, di, and ai respectively. The quantities ai and di measure the effect of the locus on the character and the degree of dominance of the locus, respectively. With two alleles, there is a linear decline in the mean of a trait with increasing f either with overdominance (di > ai) or if the allele associated with an increased value of the trait is dominant or partially dominant (aidi > 0). With additive joint effects of different loci on the trait, this conclusion can be extended to a polygenic character; inbreeding decline occurs if the average value of di over all i is positive.



I don't understand why "[..] there is a linear decline in the mean of a trait with increasing f either with overdominance (di > ai) or if the allele associated with an increased value of the trait is dominant or partially dominant (aidi > 0)"


Can you please explain why the mean of a character controlled by a single locus is only affected by the value of "f" if there is some degree of dominance.



Answer



Recap of the question:


Looking at a single locus trait (A) controlled by two alleles, A1 and A2, the phenotypic mean is only affected by inbreeding depression, f (Wright's inbreeding coefficient), if there is some degree of dominance, d. Why?


Answer:


If we take inbreeding as a higher than expected frequency of homozygotes, such that if the frequencies of alleles A1 and A2 are p=q=0.5 the expected frequencies of the genotypes in an outbred population, Poutbred, would be p2=0.25, 2pq=0.50, and q2=0.25.


Each genotype has the following phenotypic result on a trait A1A1=5, A1A2=7.5, A2A2=10... this is an additive trait with allele A1 having an additive effect of 2.5, and A2 an additive effect of 5.



We can then compare an inbred population of 100 individuals, Pinbred where the frequency of A1A1=0.5, A1A2=0, A2A2=0.5, to Poutbred , where I use ˉX to symbolise trait means.


ˉXinbred=(505)+(07.5)+(5010)100=7.5


ˉXoutbred=(255)+(507.5)+(2510)100=7.5


So when the trait is additive the population means are equal. It is onlt when we add dominance to the situation that the population means will differ as a result of inbreeding. Continuing from the above example, the populations are the same size and structure, but A2 is now completely dominant to A1 such that A1A2 individuals now have a trait value of 10. Now


ˉXinbred=(505)+(010)+(5010)100=7.5


ˉXoutbred=(255)+(5010)+(2510)100=8.75


Thus inbreeding has affected the population mean in a trait which has dominance, it is basically because the heterozygotes are less common in an inbreeding population and this is where dominance effects are seen.



"there is a linear decline in the mean of a trait with increasing f... with overdominance (di > ai)"




This is because in the case of overdominance, the outbred population mean becomes even more elevated - if we say now the A1A2 trait is a phenotype of 15 the means become


ˉXinbred=(505)+(015)+(5010)100=7.5


ˉXoutbred=(255)+(5015)+(2510)100=11.25



" there is a linear decline in the mean of a trait with increasing f... if the allele associated with an increased value of the trait is dominant or partially dominant (ai ≥ di > 0)"



The mean will increase if the dominant allele produces a smaller phenotype. Here we say A1 is now completely dominant,


ˉXinbred=(505)+(05)+(5010)100=7.5


ˉXoutbred=(255)+(505)+(2510)100=6.25


I hope that answers the question, I tried to answer last night but was too tired to think - this is just what I came up with on the walk to work today so I haven't had the time to check it/overthink it



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