Sunday 30 October 2016

bioinformatics - In Sanger sequencing, why do we resort to cloning? Why doesn't PCR suffice?


I understand that in Sanger sequencing we can clone our fragments with the help of e.g. bacteria to make multiple copies of our fragments for further analysis.


I also understand cloning can be a bottleneck in Sanger sequencing - and partly prompted the development of NGS methods.


But doesn't PCR do just that, make multiple copies?



What am I missing?



Answer



You can use PCR products in Sanger sequencing; it is very common. Using PCR products instead of cloned genes does raise a set of problems that are less of a concern than with cloned sequences, such as the presence of incomplete or incorrect PCR products, but there are standard and simple solutions for most of these concerns.


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